Jongmin Kim

The paper demonstrates using engineered retrons to generate programmable DNA for sequence-specific protein-binding, enabling dynamic control of gene networks and feedback circuits in living cells.

The paper develops RNA-protein hybrid I1-FFL circuits in E. coli to enable tunable pulse dynamics through multi-level regulation.

This paper introduces dynamical structure functions to model genetic circuits from time-series data with incomplete measurements, demonstrating their ability to explain failure modes in genetic circuits.

The paper characterizes a synthetic coherent feed-forward loop (CFFL) in E. coli cell-free systems, showing it can repress background activity but is not effective as a temporal filter.

This paper presents minimally complex DNA-based control circuits for experimental implementation of feedback control systems in synthetic biology.

This paper designs de-novo RNA-based translational repressors with multi-input logic capabilities for synthetic biology applications.

The paper explores protein degradation in a TX-TL cell-free system using ClpXP protease, highlighting its role in circuit dynamics.

This paper demonstrates the use of an RNA aptamer against T7 RNA polymerase to create synthetic logic circuits and transcriptional cascades in E. coli.

This paper characterizes a cell-free breadboard platform by measuring transcriptional and translational activities and analyzing resource limitations in gene circuit performance.

This study designs a temperature-robust incoherent feedforward loop circuit using control theory and experimental analysis.