Author

Amy E. Pasquinelli

University of California San DiegoORCID 0000-0002-9511-0039Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:C. elegans· 3 Approach:experimental assay· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1

Frequent Co-Authors

Ian A. NicastroiD· 2 shared Antti P. AaltoiD· 1 shared Delaney C. DanniD· 1 shared Delaney C. Pagliuso· 1 shared Devavrat M. BodasiD· 1 shared Erin C SchiksnisiD· 1 shared Jacob M. GarriguesiD· 1 shared Jerry S Chen· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersGenomics

Ian A. NicastroORCID

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3 papers

Recent·Most cited

GenomicsNucleic Acids ResearchPeer-reviewedNov 18, 2024

Full-length direct RNA sequencing reveals extensive remodeling of RNA expression, processing and modification in aging Caenorhabditis elegans

Erin C Schiksnis, Ian A. Nicastro, Amy E. Pasquinelli

This study uses full-length RNA sequencing to identify age-related changes in RNA expression, processing, and modification in C. elegans.

8 citations

C. eleganslong-read sequencing

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GeneticsbioRxivPreprintMay 18, 2023

Expression, not sequence, distinguishes miR-238 from its miR-239ab sister miRNAs in promoting longevity in Caenorhabditis elegans

Laura B. Chipman, San Luc, Ian A. Nicastro…·Amy E. Pasquinelli

The paper shows that miR-238, not its sequence-similar miR-239ab siblings, promotes longevity in C. elegans through expression levels, not sequence differences.

DOI 10.1101/2023.05.18.541360

C. elegansexperimental assay

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Molecular BiologyNucleic Acids ResearchPeer-reviewedAug 1, 2019

Remodeling of the C. elegans Non-coding RNA Transcriptome by Heat Shock

William P. Schreiner, Delaney C. Pagliuso, Jacob M. Garrigues…·Amy E. Pasquinelli

This study shows that heat shock in C. elegans affects the expression of various non-coding RNAs, some of which are directly regulated by HSF-1.

36 citations

C. elegansbulk RNA-seq

𝕏 PostBluesky