Author

Sari Rasheed

German Center for Infection ResearchORCID 0000-0002-9700-0474Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1 Organism:human· 1 Research Focus:metabolism & bioenergetics· 1

Frequent Co-Authors

Rolf MülleriD· 2 shared Cao Nguyen DuongiD· 1 shared Carene Benasolo· 1 shared Emre Fatih BülbüliD· 1 shared Heshine Gnanasekar· 1 shared Kenan A. J. BozhüyükiD· 1 shared Olga V. KalininaiD· 1 shared Shrikrishnan SankaraniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Rolf MüllerORCID

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2 papers

Recent·Most cited

TopFor: Automated Preparation of AMBER-Compatible Parameters for Noncanonical Amino Acids in Peptides

Emre Fatih Bülbül, Heshine Gnanasekar, Carene Benasolo, Sari Rasheed, Rolf Müller, Olga V. Kalinina, Kenan A. J. Bozhüyük

TopFor automates the generation of AMBER-compatible parameters for noncanonical amino acids in peptides, enabling efficient MD simulations and integration into peptide discovery workflows.

bioRxiv · Oct 11, 2026 · PreprintBioinformatics

Adaptations of gram-negative and gram-positive probiotic bacteria in engineered living materials

Varun Sai Tadimarri, Tanya Amit Tyagi, Cao Nguyen Duong, Sari Rasheed, Rolf Müller, Shrikrishnan Sankaran

This study investigates how mechanical confinement in hydrogels affects growth, metabolism, and gene expression in gram-negative and gram-positive probiotic bacteria.

ACS Biomaterials Science & Engineering · May 13, 2025Peer-reviewedBiophysics