Author

Emre Fatih Bülbül

Helmholtz Centre for Infection ResearchORCID 0000-0002-9901-2022Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:drug response / drug discovery· 2 Research Focus:protein design· 2 Approach:deep learning· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Assay:protein sequence· 1 Assay:proteomics· 1

Frequent Co-Authors

Kenan A. J. BozhüyükiD· 2 shared Olga V. KalininaiD· 2 shared Andreas M. KanyiD· 1 shared Anna K. H. HirschiD· 1 shared Carene Benasolo· 1 shared Dietrich KlakowiD· 1 shared Dirk W. HeinziD· 1 shared Gabriele Bianchi· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Kenan A. J. BozhüyükORCID

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2 papers

Recent·Most cited

TopFor: Automated Preparation of AMBER-Compatible Parameters for Noncanonical Amino Acids in Peptides

Emre Fatih Bülbül, Heshine Gnanasekar, Carene Benasolo, Sari Rasheed, Rolf Müller, Olga V. Kalinina, Kenan A. J. Bozhüyük

TopFor automates the generation of AMBER-compatible parameters for noncanonical amino acids in peptides, enabling efficient MD simulations and integration into peptide discovery workflows.

bioRxiv · Oct 11, 2026 · PreprintBioinformatics

Generative AI designs functional thiolation domains for reprogramming non-ribosomal peptide synthetases

Emre Fatih Bülbül, Seounggun Bang, Kevin George, Gabriele Bianchi, Prateek Raj, Seonyong Chung, Vincent Pauline, Ramon Hochstrasser, Hannah A. Minas, Walid A. M. Elgaher, Andreas M. Kany, Anna K. H. Hirsch, Steven Schmitt, Dirk W. Heinz, Olga V. Kalinina, , Kenan A. J. Bozhüyük

This paper uses generative AI to design functional thiolation domains for reprogramming NRPSs, improving product formation and stability.

bioRxiv · Mar 4, 2026 · PreprintSynthetic Biology