Author

Brendan Osberg

Humboldt-Universität zu BerlinORCID 0000-0002-9854-9901Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:DNA methylation· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Alexander BlumeiD· 1 shared Altuna AkaliniD· 1 shared Bora UyariD· 1 shared Christin SiewertiD· 1 shared Daniel Teichmann· 1 shared David CapperiD· 1 shared Eilís PéreziD· 1 shared Harald StachelscheidiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Alexander BlumeORCID

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2 papers

Recent·Most cited

SteMClass: A Novel DNA Methylation-Based Classifier for iPSC In Vitro Differentiation States.

Eilís Pérez, Valeria Beatriz Fernández Vallone, Daniel Teichmann, Philipp Euskirchen, Christin Siewert, Brendan Osberg, Peggy Wolkenstein, Harald Stachelscheid, David Capper

SteMClass is a DNA methylation-based classifier that accurately identifies iPSC differentiation states across protocols and datasets.

bioRxiv · Sep 2, 2025 · PreprintCell Biology

Reproducible genomics analysis pipelines with GNU Guix

Ricardo Wurmus, Bora Uyar, Brendan Osberg, Vedran Franke, Alexander Blume, Katarzyna Wreczycka, Jonathan Ronen, Altuna Akalin

The paper presents reproducible genomics analysis pipelines using GNU Guix for RNA-seq, ChIP-seq, Bisulfite-seq, and single-cell RNA-seq, ensuring consistent results across different environments.

GigaScience · Oct 2, 2018Peer-reviewedBioinformatics