Author

Katarzyna Wreczycka

Max Delbrück CenterORCID 0000-0002-5994-4802Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Assay:ChIP-seq· 2 Assay:DNA methylation· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Altuna AkaliniD· 3 shared Alexander BlumeiD· 2 shared Bora UyariD· 2 shared Ricardo WurmusiD· 2 shared Vedran FrankeiD· 2 shared Baris TursuniD· 1 shared Björn Andreas GrüningiD· 1 shared Brendan OsbergiD· 1 shared

Activity by Year

2017-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersBioinformatics

Altuna AkalinORCID

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3 papers

Recent·Most cited

HOT or not: Examining the basis of high-occupancy target regions

Katarzyna Wreczycka, Vedran Franke, Bora Uyar, Ricardo Wurmus, Selman Bulut, Baris Tursun, Altuna Akalin

The paper investigates whether HOT regions are genuine transcription factor binding sites or ChIP-seq artifacts, finding they likely result from technical biases and specific sequence features.

Nucleic Acids Research · May 13, 2019Peer-reviewedGenomics

Reproducible genomics analysis pipelines with GNU Guix

Ricardo Wurmus, Bora Uyar, Brendan Osberg, Vedran Franke, Alexander Blume, Katarzyna Wreczycka, Jonathan Ronen, Altuna Akalin

The paper presents reproducible genomics analysis pipelines using GNU Guix for RNA-seq, ChIP-seq, Bisulfite-seq, and single-cell RNA-seq, ensuring consistent results across different environments.

GigaScience · Oct 2, 2018Peer-reviewedBioinformatics

Strategies for analyzing bisulfite sequencing data

Katarzyna Wreczycka, Alexander Blume, Dilmurat Yusuf, Björn Andreas Grüning, Yassen Assenov, Altuna Akalin

This paper reviews techniques and software for analyzing bisulfite sequencing data, focusing on quality checks, differential methylation, segmentation, and annotation methods.

Journal of Biotechnology · Aug 16, 2017Peer-reviewedBioinformatics