Author

Chris J Armit

Institute of Genetics and CancerORCID 0000-0002-9952-8141Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 3 Research Focus:cell type annotation· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Assay:imaging· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Bill HilliD· 2 shared Duncan R Davidson· 2 shared Paula MurphyiD· 2 shared Richard BaldockiD· 2 shared Shanmugasundaram VenkataramaniD· 2 shared Ann‐Marie MalloniD· 1 shared Henrik WesterbergiD· 1 shared James M. BrowniD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersDevelopmental Biology

Bill HillORCID

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3 papers

Recent·Most cited

Integrated analysis of Wnt signalling system component gene expression

Paula Murphy, Chris J Armit, Bill Hill, Shanmugasundaram Venkataraman, Patrick Frankel, Richard Baldock, Duncan R Davidson

The paper maps Wnt and Fzd gene expression across mouse embryos in 3D space to identify novel co-expression territories and regions with unique or no expression.

Development · Jul 14, 2022Peer-reviewedDevelopmental Biology

WlzWarp: An Open-Source Tool for Complex Alignment of Spatial Data

Bill Hill, Zsolt L. Husz, Chris J Armit, Duncan R Davidson, Paula Murphy, Richard Baldock

WlzWarp is an open-source tool for aligning complex spatial data, tested on mouse embryo gene-expression patterns.

bioRxiv · Feb 11, 2022 · PreprintBioinformatics

LAMA: Automated image analysis for developmentalphenotyping of mouse embryos

Neil Horner, Shanmugasundaram Venkataraman, Chris J Armit, Ramón Casero, James M. Brown, Michael D. Wong, Matthijs C. van Eede, R. Mark Henkelman, Sara Johnson, Lydia Teboul, Sara E. Wells, Steve D. M. Brown, Henrik Westerberg, Ann‐Marie Mallon

LAMA automates 3D image analysis for mouse embryo phenotyping, integrating with an anatomical atlas to annotate dysmorphologies.

Development · Feb 11, 2021Peer-reviewedBioinformatics

Chris J Armit · henhao