Author

Abhishek Upadhyay

Humboldt-Universität zu BerlinORCID 0000-0003-0046-1168Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Systems Biology· 3 Plant Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 4 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:fungi (other)· 1 Research Focus:gene regulatory network inference· 1 Organism:plant (other)· 1 Organism:yeast· 1

Frequent Co-Authors

Hanspeter HerzeliD· 3 shared Michael BrunneriD· 2 shared Alex A. R. WebbiD· 1 shared Axel C. R. DiernfellneriD· 1 shared Christoph SchmaliD· 1 shared Cornelia Madeti· 1 shared Daniela MarzolliD· 1 shared Gabriela Pingarron-CardenasiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersSystems Biology

Hanspeter HerzelORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Plant BiologyJournal of The Royal Society InterfacePeer-reviewedJan 14, 2026

Data-driven mathematical modelling explains altered timing of EARLY FLOWERING 3 in the wheat circadian oscillator

Abhishek Upadhyay, Jamila Rowland-Chandler, Julia Stewart-Wood…·James C W Locke

The paper develops a computational model of the wheat circadian oscillator to explain the altered timing of ELF3 expression compared to Arabidopsis.

2 citations

plant (other)statistical model

𝕏 PostBluesky

Systems BiologyiSciencePeer-reviewedOct 29, 2021

Mechanisms Underlying the Complex Dynamics of Temperature Entrainment by a Circadian Clock

Philipp Burt, Saskia Grabe, Cornelia Madeti…·Christoph Schmal

This study investigates how temperature cycles affect circadian rhythms in Neurospora crassa, showing complex dynamics including entrainment, period-doubling, and aperiodic behavior through mathematical modeling.

17 citations

yeaststatistical model

𝕏 PostBluesky

Systems BiologyScientific ReportsPeer-reviewedDec 17, 2020

Multiple random phosphorylations in clock proteins provide long delays and switches

Abhishek Upadhyay, Daniela Marzoll, Axel C. R. Diernfellner…·Hanspeter Herzel

The paper models how multiple random phosphorylations in clock proteins generate delays and switches necessary for circadian oscillations.

9 citations

statistical model

𝕏 PostBluesky

Systems BiologyInternational Journal of Molecular SciencesPeer-reviewedJun 19, 2019

An inactivation switch enables rhythms in a Neurospora clock model

Abhishek Upadhyay, Michael Brunner, Hanspeter Herzel

The paper develops a mathematical model of the Neurospora crassa circadian clock to elucidate the mechanism of rhythms production and glucose compensation.

16 citations

fungi (other)statistical model

𝕏 PostBluesky