Author

Kota Kasahara

Ritsumeikan UniversityORCID 0000-0003-0207-6271Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Organism:C. elegans· 1 Research Focus:gene regulatory network inference· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Aimi Tomita· 1 shared Hiroki Yamashita· 1 shared Masahiro ItoiD· 1 shared Muhamad FahmiiD· 1 shared Shintaro MinamiiD· 1 shared Takehiro Oshime· 1 shared Yasunori AizawaiD· 1 shared Yukihiko KubotaiD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenomics

Aimi Tomita

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2 papers

Recent·Most cited

GenomicsPLoS ONEPeer-reviewedSep 10, 2019

Gene Cascade Finder: A tool for identification of gene cascades and its application in Caenorhabditis elegans

Yusuke Nomoto, Yukihiko Kubota, Yuto Ohnishi…·Masahiro Ito

The paper introduces Gene Cascade Finder (GCF), a tool to identify gene cascades from RNA-Seq data, and applies it to Caenorhabditis elegans to uncover regulatory relationships in development.

3 citations

C. elegansbulk RNA-seq

𝕏 PostBluesky

BioinformaticsPLoS ONEPeer-reviewedDec 11, 2018

Characteristics of Interactions at Protein Segments External to Globular Domains in the Protein Data Bank

Kota Kasahara, Shintaro Minami, Yasunori Aizawa

The paper characterizes floating segments in proteins, finding they contain coil structures, interact with polypeptides and polynucleotides, and have specific amino acid preferences.

2 citations

protein structurestatistical model

𝕏 PostBluesky