David John Miller

This study identifies microRNAs expressed during early development of Acropora digitifera and shows their dynamic regulation across developmental stages.

The paper provides a comprehensive transcriptomic dataset and visualization tool for Acropora millepora development, revealing major gene expression transitions during gastrulation and post-settlement.

The paper identifies chromosomal inversions in Acropora kenti with excess mutational load, suggesting they are under balancing selection and may impact adaptation and genetic decline.

The paper identifies genetic adaptations in coral holobionts from the Great Barrier Reef's inshore regions linked to Holocene climate change.

The paper introduces ampir, an R package for fast genome-wide prediction of antimicrobial peptides, showing higher classification accuracy than existing methods.

The paper compares transcriptomes of Chromera and Symbiodiniaceae algae to assess their genetic relationships and thermal tolerance.

This study profiles the transcriptomic response of Symbiodiniaceae during coral-algal symbiosis establishment, revealing gene expression changes in the symbiont.

This paper presents a chromosome-scale genome assembly for the orange clownfish, providing a valuable resource for studying reef fish ecology and evolution.

The paper designs and tests RNA baits to capture phylogenetically informative loci in anthozoans, successfully resolving evolutionary relationships across multiple taxa.

The paper presents draft genomes of two Symbiodinium species and identifies genes under positive selection related to symbiosis functions.