Author

Juozas Nainys

Memorial Sloan Kettering Cancer CenterORCID 0000-0003-0297-8822Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Approach:diffusion model· 1

Frequent Co-Authors

Linas MažutisiD· 3 shared Àlvaro Quintanal-VillalongaiD· 2 shared Dana Pe’eriD· 2 shared Ambrose CarriD· 1 shared Andrea Littbarski· 1 shared Anja WilliamsiD· 1 shared Anmol AggarwaliD· 1 shared Anne-Katrin BergeriD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersBioinformatics

Linas MažutisORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 21, 2026

Hierarchical classification of immune cell transcriptomes at population-scale

Christopher Beltz, Zekai Qiu, Leon Sadowski…·Thomas Walle

The paper introduces Suco and Compocyte to classify immune cells from 3,965 patients, identifying new macrophage and monocyte states and T cell memory erosion in metastases.

DOI 10.64898/2026.05.30.728980

humanscRNA-seq

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Molecular BiologyNucleic Acids ResearchPeer-reviewedDec 26, 2024

inDrops-2: a flexible, versatile and cost-efficient droplet microfluidics approach for high-throughput scRNA-seq of fresh and preserved clinical samples

Simonas Juzėnas, Karolis Goda, Vaidotas Kiseliovas…·Linas Mažutis

The paper introduces inDrops-2, a cost-efficient scRNA-seq platform that profiles clinical samples with sensitivity comparable to commercial systems and demonstrates its utility in analyzing lung carcinoma samples.

16 citations

humanscRNA-seq

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BioinformaticsCellPeer-reviewedJan 1, 2018

MAGIC: A diffusion-based imputation method reveals gene-gene interactions in single-cell RNA-sequencing data

David van Dijk, Roshan Sharma, Juozas Nainys…·Dana Pe’er

MAGIC improves single-cell RNA-seq data by imputing missing values and revealing gene-gene interactions through a diffusion-based method.

1,830 citationstop 1%

mousescRNA-seq

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