Expanding vaginal microbiome pangenomes via a custom MIDAS database reveals Lactobacillus crispatus accessory genes associated with cervical dysplasia
Claire A. Dubin, Chunyu Zhao, Katherine S. Pollard…·Marina Sirota
Author
University of California, BerkeleyORCID 0000-0003-0319-6013Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
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Claire A. Dubin, Chunyu Zhao, Katherine S. Pollard…·Marina Sirota
Reuben D. Sarwal, Victor Tarca, Claire A. Dubin…·Marina Sirota
This study evaluates large language models' ability to generate predictive modeling code for reproductive health using standardized datasets, finding R code generation more successful than Python and some models matching top DREAM challenge teams.
Mark Voorhies, Bastian Joehnk, Jessie Uehling…·Anita Sil
The paper develops a method to infer strain composition in microbial mixed cultures using natural SNPs as barcodes, validated on Coccidioides posadasii isolates and applied to GWAS.
Marcus de Melo Teixeira, Jason Stajich, Jason W. Sahl…·Bridget M. Barker
The paper presents a chromosomal-level genome assembly of the Coccidioides posadasii Silveira strain using SMRT sequencing, improving genome annotation and enabling future genomic studies.