Author

Shaden Aguirre

University of California San DiegoORCID 0000-0003-0431-7569Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:metabolomics· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Aileen LuiD· 2 shared Alan K. JarmuschiD· 2 shared Pieter C. DorresteiniD· 2 shared Rohit S. AdvaniiD· 2 shared Alexander A. AksenoviD· 1 shared Alexey V. MelnikiD· 1 shared Alison F. VrbanaciD· 1 shared Allegra T. AroniD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Aileen LuORCID

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2 papers

Recent·Most cited

BioinformaticsClinical and Translational SciencePeer-reviewedNov 18, 2021

Physicochemical and Pharmacokinetic Properties Determining Drug Detection in Skin

Wout Bittremieux, Rohit S. Advani, Alan K. Jarmusch…·Shirley M. Tsunoda

The paper uses a random forest classifier to predict which drugs are detectable on skin using metabolomics, finding that nervous system drugs are more likely to be detected.

9 citations

metabolomicsmachine learning (classical)

𝕏 PostBluesky

BioinformaticsNature MethodsPeer-reviewedAug 17, 2020

Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

Alan K. Jarmusch, Mingxun Wang, Christine M. Aceves…·Pieter C. Dorrestein

The paper develops ReDU, a tool for discovering and re-analyzing metabolomics data in GNPS, following FAIR principles.

152 citationstop 2%

metabolomicsexperimental assay

𝕏 PostBluesky