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Nature MethodsBioinformaticsPeer-reviewed journal article

Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

Alan K. JarmuschiD, Mingxun WangiD, Christine M. AcevesiD, Rohit S. AdvaniiD, Shaden AguirreiD, Alexander A. AksenoviD, Gajender AletiiD, Allegra T. AroniD, Anelize BauermeisteriD, Sanjana Bolleddu, Amina BouslimaniiD, Andrés Mauricio Caraballo‐RodrígueziD, Rama Chaar, Roxana CorasiD, Emmanuel O. Elijah, Madeleine ErnstiD, Julia M. GauglitziD, Emily C. GentryiD, Makhai Husband, Scott A. JarmuschiD, Kenneth Lyons JonesiD, Zdeněk KameníkiD, Audrey Le GouëlleciD, Aileen LuiD, Laura‐Isobel McCalliD, , Pieter C. DorresteiniD

PDFDOIPreprint

Abstract

Metabolomics data are difficult to find and reuse, even in public repositories. We, therefore, developed the Reanalysis of Data User (ReDU) interface (https://redu.ucsd.edu/), a community- and data-driven approach that solves this problem at the repository scale. ReDU enables public data discovery and co- or re-analysis via uniformly formatted, publicly available MS/MS data and metadata in the Global Natural Product Social Molecular Networking Platform (GNPS), consistent with findable, accessible, interoperable, and reusable (FAIR) principles.1

Citations
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top 2%

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