Author

Slim Karkar

Centre National de la Recherche ScientifiqueORCID 0000-0003-0501-3137Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:deconvolution· 1 Research Focus:dimensionality reduction· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Antonin MarchaisiD· 1 shared Aurélia Baurès· 1 shared Baptiste Audinot· 1 shared Birgit GeoergeriD· 1 shared Cathy PhilippeiD· 1 shared Claire Dandine‐RoullandiD· 1 shared Corentin ThuillieziD· 1 shared Damien DrubayiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperBioinformatics

Antonin MarchaisORCID

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3 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedDec 17, 2025

A robust workflow to benchmark deconvolution of multi-omic data

Elise Amblard, Vadim Bertrand, Hugo Barbot…·Magali Richard

This paper benchmarks deconvolution algorithms for multi-omic data, identifying their strengths and limitations across different conditions and data types.

1 citation

bulk RNA-seqDNA methylation

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BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2024

CellsFromSpace: A fast, accurate and reference-free tool to deconvolve and annotate spatially distributed Omics data

Corentin Thuilliez, Gaël Moquin‐Beaudry, Pierre Khneisser…·Antonin Marchais

CellsFromSpace is a reference-free tool for deconvolving and annotating spatial transcriptomic data, outperforming existing methods in accuracy and speed across multiple technologies.

6 citations

spatial transcriptomicsstatistical model

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BioinformaticsEuropean Journal of Human GeneticsPeer-reviewedMar 4, 2021

Genome-wide haplotype association study in imaging genetics using whole-brain sulcal openings of 16,304 UK Biobank subjects.

Slim Karkar, Claire Dandine‐Roulland, Jean‐François Mangin…·Vincent Frouin

This study performs a genome-wide haplotype association analysis of brain sulcal openings in 16,304 UK Biobank subjects, finding haplotype analysis more sensitive than single-SNP approaches.

9 citations

humanGWAS summary statistics

𝕏 PostBluesky