Author

Matthew L. Bootsma

University of Wisconsin–MadisonORCID 0000-0003-0879-5066Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cancer & tumor microenvironment· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Assay:Hi-C· 1 Organism:human· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Ankita NandiD· 1 shared David Alan QuigleyiD· 1 shared Emma Minnee· 1 shared Eva CoreyiD· 1 shared Felix Yi-Chung FengiD· 1 shared Garrett J. McKinneyiD· 1 shared Giacomo GrilloiD· 1 shared Greg G. SassiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperCancer Biology

Ankita NandORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintAug 8, 2025

Genetic and Epigenetic Reprogramming of Transposable Elements Drives ecDNA-Mediated Metastatic Prostate Cancer

Lisanne Mout, Thaidy Moreno-Rodriguez, Giacomo Grillo…·Mathieu Lupien

The paper identifies a subgroup of mCRPC characterized by LINE1 repeat DNA elements flanking the AR gene, which drive AR overexpression and confer resistance to androgen signaling inhibitors.

4 citations

humanHi-C

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GenomicsMolecular Ecology ResourcesPeer-reviewedJul 15, 2020

A GT-seq panel for walleye (Sander vitreus) provides a generalized workflow for efficient development and implementation of amplicon panels in non-model organisms.

Matthew L. Bootsma, Kristen M. Gruenthal, Garrett J. McKinney…·Wesley A. Larson

The paper develops a GT-seq panel for walleye and outlines a workflow for creating efficient amplicon panels in non-model organisms.

50 citationstop 4%

DNA methylationexperimental assay

𝕏 PostBluesky