Chengdao Li

Highly heterozygous Citrus changshan-huyou Y. B. Chang originated from ancient hybridization between mandarin and pummelo and displayed distinct tissue-specific allelic imbalance

This paper reports the genome sequencing and analysis of Citrus changshan-huyou, revealing its origin from ancient hybridization between mandarin and pummelo and identifying tissue-specific allelic imbalance.

A pangenome and pantranscriptome of hexaploid oat

The paper presents a pangenome and pantranscriptome of hexaploid oat, describing gene expression diversity and structural genome variation across 33 accessions and six tissues.

A monophyletic origin of domesticated barley

This study re-evaluates barley domestication history using genetic data, showing a monophyletic origin and identifying the Fertile Crescent as the likely domestication site.

Whole-Genome Sequencing of the Wild Barley Diversity Collection: A Resource for Identifying and Exploiting Genetic Variation for Cultivated Barley Improvement

The paper sequenced wild barley to identify genetic markers linked to agronomic traits and found novel loci for stem rust resistance and days to heading.

Adaptive diversification through structural variation in barley

This study presents a barley pangenome revealing structural variation linked to traits like disease resistance and plant architecture, highlighting its role in adaptive evolution.

A pangenome analysis pipeline (PSVCP) provides insights into rice functional gene identification

The paper introduces a pangenome analysis pipeline (PSVCP) for rice that improves functional gene identification by capturing structural variations and provides insights into genomic diversity and trait associations.

Wheat Panache - a pangenome graph database representing presence/absence variation across 16 bread wheat genomes

A global barley panel revealing genomic signatures of breeding in modern cultivars

The paper analyzes a global barley panel to identify genomic regions under selection pressure and shows modern Australian barley has higher genetic diversity than historical cultivars.

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

TRITEX improves chromosome-scale genome assemblies for Triticeae crops using open-source tools and multiple sequencing data types.