Author

Martin Fahrenberger

University of ViennaORCID 0000-0003-1107-0197Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexander W. StockingeriD· 1 shared Arndt von HaeseleriD· 1 shared B. Duygu ÖzpolatiD· 1 shared Christine RutaiD· 1 shared Christopher EskiD· 1 shared Florian RaibleiD· 1 shared Guillaume BalavoineiD· 1 shared Juergen A. KnoblichiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperDevelopmental Biology

Alexander W. StockingerORCID

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2 papers

Recent·Most cited

BioinformaticsGigaSciencePeer-reviewedJan 1, 2025

GTestimate: Improving relative gene expression estimation in scRNA-seq using the Good-Turing estimator

Martin Fahrenberger, Christopher Esk, Juergen A. Knoblich, Arndt von Haeseler

GTestimate improves scRNA-seq normalization by using the Good-Turing estimator to better estimate relative gene expression and cell-cell distances.

2 citations

scRNA-seqstatistical model

𝕏 PostBluesky

Developmental BiologyNature CommunicationsPeer-reviewedNov 18, 2024

Molecular profile, source and lineage restriction of stem cells in an annelid regeneration model

Alexander W. Stockinger, Leonie Adelmann, Martin Fahrenberger…·Florian Raible

The paper maps cellular profiles and lineage restrictions during posterior regeneration in Platynereis dumerilii using single-cell RNA sequencing and mosaic transgenesis, revealing molecular parallels with vertebrate regeneration.

11 citations

scRNA-seqexperimental assay

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