Author

Niels Hulstaert

Ghent UniversityORCID 0000-0003-1172-5202Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:proteomics· 5 Research Focus:benchmarking· 4 Research Focus:software / tool· 3 Approach:experimental assay· 2 Research Focus:protein design· 2 Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Research Focus:database / resource· 1

Frequent Co-Authors

Lennart MartensiD· 5 shared Elien VandermarliereiD· 3 shared Demet Turan· 2 shared Pathmanaban RamasamyiD· 2 shared Ralf GabrielsiD· 2 shared Robbin BouwmeesteriD· 2 shared Sven DegroeveiD· 2 shared Wim VrankeniD· 2 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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5 shared papersBioinformatics

Lennart MartensORCID

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5 papers

Recent·Most cited

Molecular BiologyNature CommunicationsPeer-reviewedNov 5, 2021

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane Boone, Pathmanaban Ramasamy, Jasper Zuallaert…·Nico Callewaert

The paper develops SECRiFY, a method to assess secretability of protein fragments in yeast, revealing intrinsic disorder and flexibility as key factors.

9 citations

yeastproteomics

𝕏 PostBluesky

BioinformaticsNature MethodsPeer-reviewedOct 28, 2021

DeepLC can predict retention times for peptides that carry as-yet unseen modifications

Robbin Bouwmeester, Ralf Gabriels, Niels Hulstaert…·Sven Degroeve

DeepLC predicts retention times for modified peptides, improving identification accuracy in LC-MS workflows by handling unseen modifications.

242 citationstop 1%

proteomicsdeep learning

𝕏 PostBluesky

BioinformaticsJournal of Proteome ResearchPeer-reviewedJun 8, 2020

Scop3P: a comprehensive resource of human phosphosites within their full context

Pathmanaban Ramasamy, Demet Turan, Natalia Tichshenko…·Lennart Martens

Scop3P provides a comprehensive database of human phosphosites with structural and biophysical context, integrating sequence, structure, and phosphoproteomics data.

41 citations

humanproteomics

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BioinformaticsJournal of Proteome ResearchPeer-reviewedMay 8, 2020

COSS: A fast and user-friendly tool for spectral library searching

Genet Abay Shiferaw, Elien Vandermarliere, Niels Hulstaert…·Pieter‐Jan Volders

COSS is a spectral library search tool that identifies more peptides faster than existing tools and supports multiple data formats.

23 citations

proteomicsstatistical model

𝕏 PostBluesky

BioinformaticsJournal of Proteome ResearchPeer-reviewedNov 22, 2019

ThermoRawFileParser: modular, scalable and cross-platform RAW file conversion

Niels Hulstaert, Jim Shofstahl, Timo T. Sachsenberg…·Yasset Pérez‐Riverol

ThermoRawFileParser converts Thermo RAW files to open formats like mzML, enabling broader use with workflow systems and providing a user-friendly interface.

256 citationstop 1%

proteomicsexperimental assay

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