Mallick Ayan

autoFISH provides a modular toolbox for automated smFISH experiments, including equipment plans, software, protocols, and analysis workflows validated on cell lines and tissues.

This study uses single-cell RNA sequencing to show that radiotherapy induces pro-angiogenic signaling in human lung tissue, including upregulation of VEGFA and changes in capillary and macrophage populations.

This paper introduces ComSeg, a segmentation algorithm for image-based spatial transcriptomics that outperforms existing methods in cell type calling and handles complex tissue structures.