Author

Ellie L. Pingry

Vanderbilt UniversityORCID 0000-0003-1411-0465Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Organism:human· 3 Assay:imaging· 3 Assay:spatial transcriptomics· 3 Approach:deep learning· 2 Research Focus:spatial domain detection· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1

Frequent Co-Authors

Jeffrey M. SpragginsiD· 3 shared Allison B. EsselmaniD· 2 shared Felipe A. MoseriD· 2 shared Mark P. deCaesteckeriD· 2 shared Nathan Heath PattersoniD· 2 shared Raf Van de PlasiD· 2 shared Agnes B. FogoiD· 1 shared Amelia Wang· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersBiochemistry

Jeffrey M. SpragginsORCID

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3 papers

Recent·Most cited

BiochemistryKidney InternationalPeer-reviewedNov 19, 2024

Revealing In Situ Molecular Profiles of Glomerular Cell Types and Substructures with Integrated Imaging Mass Spectrometry and Multiplexed Immunofluorescence Microscopy

Allison B. Esselman, Felipe A. Moser, Léonore E. M. Tideman…·Jeffrey M. Spraggins

This paper integrates MALDI IMS and MxIF microscopy to analyze lipid and molecular profiles of glomerular cell types and substructures in human kidney tissue.

24 citations

humanspatial transcriptomics

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Systems BiologyCommunications BiologyPeer-reviewedOct 30, 2024

Consensus tissue domain detection in spatial -omics data using MILWRM

Harsimran Kaur, Cody N. Heiser, Eliot T. McKinley…·Simon Vandekar

The paper introduces MILWRM, a tool for detecting tissue domains in spatial-omics data, and demonstrates its application in human colonic polyps and mouse brain slices.

3 citations

humanmouse

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BioinformaticsbioRxivPreprintJul 16, 2021

Automated Segmentation of Kidney Nephron Structures by Deep Learning Models on Label-free Autofluorescence Microscopy for Spatial Multi-omics Data Acquisition and Mining

Nathan Heath Patterson, Ellie L. Pingry, Felipe A. Moser…·Jeffrey M. Spraggins

14 citations

humanspatial transcriptomics

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