Author

Joseph N Jarvis

London School of Hygiene & Tropical MedicineORCID 0000-0003-1459-5554Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:fungi (other)· 1 Organism:human· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Graeme MeintjesiD· 2 shared Shichina KannambathiD· 2 shared Thomas Stephen HarrisoniD· 2 shared Tihana A. BicaniciD· 2 shared Alan Michael PittmaniD· 1 shared Anthea Ryan· 1 shared James Milburn· 1 shared Johanna L. RhodesiD· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersGenomics

Graeme MeintjesORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintApr 5, 2024

In vitro host transcriptomics during Cryptococcus neoformans, Cryptococcus gattii, and Candida albicans infection of South African volunteers

Ronan Doyle, Shichina Kannambath, Alan Michael Pittman…·Tihana A. Bicanic

The paper compares the transcriptional responses of immune cells to three fungal pathogens in vitro, finding distinct expression patterns and a weaker response to cryptococcal stimuli.

DOI 10.1101/2024.04.05.588257

humanbulk RNA-seq

𝕏 PostBluesky

GenomicsG3 Genes Genomes GeneticsPeer-reviewedFeb 10, 2017

A population genomics approach to assessing the genetic basis of within-host microevolution underlying recurrent cryptococcal meningitis infection

Johanna L. Rhodes, Mathew A. Beale, Mathieu Vanhove…·Tihana A. Bicanic

The paper uses whole-genome sequencing to determine whether recurrent cryptococcal meningitis in HIV patients results from relapse or reinfection, finding clonal relationships in most cases and novel hypermutator mechanisms in others.

100 citationstop 2%

fungi (other)whole-genome sequencing

𝕏 PostBluesky