Author

Ronan Doyle

London School of Hygiene & Tropical MedicineORCID 0000-0001-5001-1945Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alan Michael PittmaniD· 1 shared Alexander S. PymiD· 1 shared Camus NimmoiD· 1 shared Carrie Burgess· 1 shared François BallouxiD· 1 shared Graeme MeintjesiD· 1 shared James Milburn· 1 shared Joseph N JarvisiD· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Alan Michael PittmanORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintApr 5, 2024

In vitro host transcriptomics during Cryptococcus neoformans, Cryptococcus gattii, and Candida albicans infection of South African volunteers

Ronan Doyle, Shichina Kannambath, Alan Michael Pittman…·Tihana A. Bicanic

The paper compares the transcriptional responses of immune cells to three fungal pathogens in vitro, finding distinct expression patterns and a weaker response to cryptococcal stimuli.

DOI 10.1101/2024.04.05.588257

humanbulk RNA-seq

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GenomicsBMC GenomicsPeer-reviewedMay 20, 2019

Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture

Camus Nimmo, Liam P. Shaw, Ronan Doyle…·Alexander S. Pym

This study compares whole genome sequencing of Mycobacterium tuberculosis directly from sputum to sequencing from culture, finding greater genetic diversity in sputum-derived samples.

98 citationstop 1%

whole-genome sequencingexperimental assay

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