Author

Ziyi Zhou

Shanghai Jiao Tong UniversityORCID 0000-0003-1589-0598Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:drug response / drug discovery· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Bozitao ZhongiD· 2 shared Liang HongiD· 2 shared Huiqun YuiD· 1 shared Jin HuangiD· 1 shared Linquan BaiiD· 1 shared Mingchen LiiD· 1 shared Pan TaniD· 1 shared Qin Xu· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersSynthetic Biology

Bozitao ZhongORCID

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2 papers

Recent·Most cited

Synthetic BiologybioRxivPreprintMar 10, 2026

Reaction-Conditioned Enzyme Discovery with Multimodal Deep Learning

Ziyi Zhou, Yutong Hu, Yuanzhen Zhang…·Pan Tan

This paper introduces VenusRXN, a deep learning framework for reaction-conditioned enzyme discovery, achieving high accuracy in identifying enzymes for novel reactions.

1 citation

deep learningdrug response / drug discovery

𝕏 PostBluesky

Bioinformaticsneural information processing systemsPeer-reviewedJan 1, 2024

ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention

Mingchen Li, Yang Tan, Xinzhu Ma…·Liang Hong

ProSST integrates protein sequences and structures into a Transformer-based model, achieving state-of-the-art performance in mutation effect prediction and downstream tasks.

47 citationstop 1%

protein sequencedeep learning

𝕏 PostBluesky