Author

Christina Herrmann

SIB Swiss Institute of BioinformaticsORCID 0000-0003-1649-3463Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Approach:benchmark study· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexander KanitziD· 2 shared Dominik BürriiD· 2 shared Maria KatsantoniiD· 2 shared Mihaela ZavolaniD· 2 shared Anastasiya BörschiD· 1 shared Asier Gonzalez‐UriarteiD· 1 shared Benoît P. NicoletiD· 1 shared Chelsea HerdmaniD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersBioinformatics

Alexander KanitzORCID

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2 papers

Recent·Most cited

BioinformaticsRNAPeer-reviewedOct 10, 2023

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data

Sam Bryce-Smith, Dominik Bürri, Matthew R. Gazzara…·Mihaela Zavolan

The paper benchmarks eight tools for identifying and quantifying alternative polyadenylation sites from RNA-seq data using real, synthetic, and 3'-end sequencing data.

18 citations

bulk RNA-seqbenchmark study

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 18, 2021

ZARP: An automated workflow for processing of RNA-seq data

Maria Katsantoni, Foivos Gypas, Christina J. Herrmann…·Alexander Kanitz

ZARP is an RNA-seq analysis workflow that automates data processing using Snakemake, reducing hands-on time for users by integrating best practices and generating detailed reports.

10 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky