Foivos Gypas

ZARP: An automated workflow for processing of RNA-seq data

ZARP is an RNA-seq analysis workflow that automates data processing using Snakemake, reducing hands-on time for users by integrating best practices and generating detailed reports.

Nanopore sequencing reveals endogenous NMD-targeted isoforms in human cells

The paper uses long-read sequencing to identify novel NMD-sensitive mRNAs and reveals features of their biogenesis and biological role.

Protease-mediated processing of Argonaute proteins controls small RNA association

The paper shows that proteolytic processing of Argonaute proteins by DPF-3 regulates small RNA association, maintaining genome integrity and fertility in C. elegans.

Ewing sarcoma breakpoint region 1 prevents transcription-associated genome instability

This study shows that EWSR1 prevents DNA double-strand breaks by binding to intronic regions in its own locus and maintaining genomic stability.