Sebastian Marquardt

This study identifies ACHLYS, a lncRNA that modulates NSRa biomolecular condensates to regulate alternative splicing in Arabidopsis root development.

The paper identifies a long non-coding RNA, FLAIL, that represses flowering in Arabidopsis by directly regulating gene expression.

The paper identifies Hda1C as a repressor of divergent non-coding RNA transcription in budding yeast by reducing transcription initiation frequency and histone acetylation.

TranscriptomeReconstructoR provides a pipeline for accurate de novo transcriptome annotation using integrated RNA-seq and 5/3 tag sequencing data, improving gene model quality in Arabidopsis thaliana.

The paper uses TIF-seq to identify TSS/PAS pairs in Arabidopsis, revealing widespread promoter-proximal transcriptional termination through sppRNAs.

The paper develops plaNET-seq to study temperature-dependent nascent RNAPII transcription dynamics in Arabidopsis, revealing mechanisms of transcriptional regulation under cold stress.

The paper investigates how RNAPII transcription represses intragenic promoters in plants by altering chromatin signatures and requiring the FACT complex.

This study identifies the lncRNA SVALKA and its read-through transcript asCBF1, showing they regulate CBF1 expression and freezing tolerance in Arabidopsis during cold acclimation.