Author

Susanna Marquez

Yale UniversityORCID 0000-0003-1946-7957Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Gur YaariiD· 2 shared Steven H. KleinsteiniD· 2 shared Alexander PeltzeriD· 1 shared Cole G. JenseniD· 1 shared Corey T. WatsoniD· 1 shared Daniel Gadala-Maria· 1 shared David Ladd· 1 shared Edel AroniD· 1 shared

Activity by Year

2019-2024 · peak 1/yr

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10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Gur YaariORCID

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2 papers

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedJul 26, 2024

nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework

Gisela Gabernet, Susanna Marquez, Robert D. Bjornson…·Steven H. Kleinstein

The paper introduces nf-core/airrflow, a Nextflow-based workflow for processing AIRR-seq data, validated on simulated and real datasets to analyze immune receptor repertoires.

23 citations

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsFrontiers in ImmunologyPeer-reviewedFeb 13, 2019

Identification of subject-specific immunoglobulin alleles from expressed repertoire sequencing data

Daniel Gadala-Maria, Moriah Gidoni, Susanna Marquez…·Steven H. Kleinstein

The paper improves the TIgGER algorithm to accurately identify subject-specific immunoglobulin alleles from AIRR-seq data, even when alleles differ by more than 5 SNPs from known database alleles.

67 citationstop 4%

humanscRNA-seq

𝕏 PostBluesky