Marek Bartošovič

The paper uses dual-modality nano-CUT&Tag to analyze H3K27ac and H3K27me3 in Drosophila embryos, revealing lineage-specific Polycomb repression and epigenetic potential landscapes.

This study uses G4 scCUT&Tag to profile G-quadruplexes in mouse brain cells, showing lineage-specific G4s and enabling integrative analysis with scRNA-Seq data.

The paper introduces spatial-Mux-seq, a multi-modal spatial technology that profiles five modalities in tissues, revealing new insights into cell types, gene regulation, and epigenetic gradients in mouse embryos and brains.

The paper profiles histone modifications in adult human CNS cells, revealing epigenetic memory of developmental programs in oligodendroglia.

The paper introduces nano-CT, a single-cell CUT&Tag method that simultaneously profiles three epigenomic modalities, and demonstrates its application in analyzing juvenile mouse brain chromatin states.

This paper introduces spatial-ATAC-seq, a method for spatially resolved chromatin accessibility profiling at the cellular level, and demonstrates its application in mouse embryos and human tonsil tissue.

This paper presents spatial epigenome profiling using CUT&Tag and microfluidic barcoding to map histone modifications at tissue scale and single-cell level in mouse embryos and olfactory bulbs.

The paper identifies new RNA targets of ALKBH8, including additional tRNAs and non-coding RNAs, through transcriptome-wide analysis using HITS-CLIP-seq and RIP-seq.

The paper uses single-cell Cut&Tag to profile histone modifications in the mouse brain, revealing cell identity and regulatory principles at single-cell resolution.