Author

Nenad Bartoniček

Garvan Institute of Medical ResearchORCID 0000-0003-2144-1887Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Approach:experimental assay· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Alexander P. CorriD· 1 shared Alexander SwarbrickiD· 1 shared Alison J. PotteriD· 1 shared Amelia R. McGlade· 1 shared Ana Beleza‐MeirelesiD· 1 shared Anthony M. JoshuaiD· 1 shared Aurélie CazetiD· 1 shared C. Marcelo SergioiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperSystems Biology

Alexander P. CorrORCID

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4 papers

Recent·Most cited

Cancer BiologyCancer ResearchPeer-reviewedMar 25, 2026

Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naive localised prostate cancer

Eva Apostolov, Daniel Lee Roden, Holly Holliday…·Alexander Swarbrick

This study uses single-cell RNA-sequencing and spatial transcriptomics to analyze epithelial and fibroblast states in hormone therapy-naive prostate cancer, identifying novel phenotypes and molecular perturbations.

3 citationstop 1%

humanscRNA-seq

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BioinformaticsComputational and Structural Biotechnology JournalPeer-reviewedJan 1, 2025

macpie: scalable workflow for high-throughput transcriptomic profiling

Nenad Bartoniček, Xin Liu, Laura Twomey…·Susanne Ramm

macpie streamlines analysis of high-throughput transcriptomic profiling data from plate-based screens using R, integrating preprocessing, quality control, and multimodal data integration.

DOI 10.1016/j.csbj.2025.11.002

bulk RNA-seqstatistical model

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Systems BiologyNature CommunicationsPeer-reviewedMay 5, 2021

Osteocyte Transcriptome Mapping Identifies a Molecular Landscape Controlling Skeletal Homeostasis and Susceptibility to Skeletal Disease

Scott E. Youlten, John P. Kemp, John G. Logan…·Peter Ian Croucher

The paper maps the osteocyte transcriptome in mice, identifies 1239 genes, and links them to skeletal disease susceptibility in humans.

133 citationstop 2%

mousebulk RNA-seq

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GenomicsFrontiers in GeneticsPeer-reviewedApr 12, 2019

Targeted, High-Resolution RNA Sequencing Of Non-Coding Genomic Regions Associated With Neuropsychiatric Functions

Simon A. Hardwick, Samuel D. Bassett, Dominik C. Kaczorowski…·John S. Mattick

The paper identifies novel non-coding RNAs in human brain tissue associated with neuropsychiatric traits using targeted RNA capture and long-read sequencing.

42 citations

humanbulk RNA-seq

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