Author

Stéphane Chaillou

AgroParisTechORCID 0000-0003-2229-0697Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Anne-Cecile LeforestieriD· 1 shared Claire Le MarreciD· 1 shared Colin R. TinsleyiD· 1 shared Éric Dugat‐BonyiD· 1 shared Florence ValenceiD· 1 shared Françoise IrlingeriD· 1 shared Gwendoline MarquetiD· 1 shared Hélène ChiapelloiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperMicrobiology

Anne-Cecile LeforestierORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintOct 3, 2026

Evidence of active phage replication during vegetable fermentation and implications for the dynamics of bacterial communities

Julia Cantuti Gendre, Margareth Renault, Anne-Cecile Leforestier…·Éric Dugat‐Bony

The paper investigates phage activity during vegetable fermentation and shows phages influence bacterial succession without disrupting fermentation stability.

DOI 10.64898/2026.10.02.756237

metagenomicsexperimental assay

𝕏 PostBluesky

MicrobiologyOpen Research EuropePeer-reviewedOct 22, 2025

Food Microbiome Metabolic Modules (F3M), a tool suite for functional profiling of food microbiomes

Julien Tap, Nacer Mohellibi, Colin R. Tinsley…·Stéphane Chaillou

The paper introduces F3M, a tool suite for functional profiling of food microbiomes, including a curated database, gene catalog builder, and R package for analyzing metatranscriptomic data.

DOI 10.12688/openreseurope.21502.1

metagenomicsdatabase / resource

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BioinformaticsMicrobiology SpectrumPeer-reviewedMay 15, 2024

Integration of metataxonomic datasets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables

Romane Junker, Florence Valence, Michel‐Yves Mistou…·Hélène Chiapello

The paper integrates metataxonomic datasets to analyze microbial community dynamics in fermented vegetables, identifying key bacterial associations and succession patterns.

7 citations

metagenomicsstatistical model

𝕏 PostBluesky