Author

Sarah Y. Kim

Broad InstituteORCID 0000-0003-2290-6025Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:genetic perturbation / CRISPR· 1 Research Focus:host-pathogen & immune response· 1 Organism:mouse· 1

Frequent Co-Authors

Aarthi RamakrishnaniD· 1 shared Angelina M. CicerchiaiD· 1 shared Ashwin V. KammulaiD· 1 shared Claire A. Palin· 1 shared Cun Lan ChuongiD· 1 shared Eric J. NestleriD· 1 shared Erin N. Kistler· 1 shared Genevieve Marie BolandiD· 1 shared

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2024-2025 · peak 1/yr

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10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Aarthi RamakrishnanORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintApr 22, 2025

CREB5 promotes immunotherapy resistance via tumor-intrinsic collagenmatrix deposition

Payal Tiwari, Kayla J. Colvin, Sarah Y. Kim…·Robert T. Manguso

The paper identifies CREB5 as a driver of immunotherapy resistance in melanoma by promoting collagen matrix deposition, which activates LAIR1 signaling on immune cells.

1 citation

mousebulk RNA-seq

𝕏 PostBluesky

BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2024

DeepRegFinder: Deep Learning-Based Regulatory Elements Finder

Aarthi Ramakrishnan, George Wangensteen, Sarah Y. Kim…·Li Shen

DeepRegFinder uses deep learning to predict enhancers and promoters from genomic data, outperforming existing methods across multiple cell types.

6 citations

ChIP-seqdeep learning

𝕏 PostBluesky