Shanshan Bai

The paper introduces wellDA-seq, a method to co-profile genome and epigenome in single cells, revealing genetic hardwiring and epigenetic plasticity in breast cancer.

This paper constructs a comprehensive spatially resolved single-cell genomic atlas of the adult human breast, identifying 11 major cell types and revealing diverse immune and epithelial cell populations.

This paper introduces CellTrek, a computational method that integrates scRNA-seq and spatial transcriptomics data to map single cells in tissues, showing accurate spatial organization in mouse and human tissues.

CopyKit is a computational tool that resolves clonal substructure and reconstructs genetic lineages in tumors using single cell copy number data.