Author

Nils D. Forkert

University of CalgaryORCID 0000-0003-2556-3224Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 3 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Organism:mouse· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1

Frequent Co-Authors

Benedikt HallgrímssoniD· 3 shared Lucas Lo VercioiD· 3 shared Marta MarchiniiD· 3 shared Marta Vidal‐GarcíaiD· 3 shared Ralph MarcucioiD· 3 shared Rebecca M. GreeniD· 3 shared Andreas DauteriD· 2 shared Arthur D. LanderiD· 2 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersDevelopmental Biology

Benedikt HallgrímssonORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Developmental BiologybioRxivPreprintMay 12, 2023

Quantifying the relationship between cell proliferation and morphology during development of the face

Rebecca M. Green, Lucas Lo Vercio, Andreas Dauter…·Benedikt Hallgrímsson

The paper develops an imaging pipeline to quantify 3D cellular proliferation and morphology during mouse facial development, showing their tight correlation.

DOI 10.1101/2023.05.12.540515

mouseimaging

𝕏 PostBluesky

GeneticsScientific DataPeer-reviewedMay 25, 2022

MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses

Jay Devine, Marta Vidal‐García, Wei Liu…·Benedikt Hallgrímsson

MusMorph provides standardized mouse morphology data for meta-analyses, including craniofacial and brain structures across developmental stages and genotypes.

12 citations

mouseimaging

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BioinformaticsbioRxivPreprintMar 8, 2021

Segmentation of Tissues and Proliferating Cells in Light-Sheet Microscopy Images using Convolutional Neural Networks

Lucas Lo Vercio, Rebecca M. Green, Samuel Robertson…·Nils D. Forkert

This paper develops CNNs to segment tissues and proliferating cells in light-sheet microscopy images, achieving results comparable to manual segmentation.

6 citations

imagingdeep learning

𝕏 PostBluesky