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This paper introduces a QTL mapping method using expected local genetic relatedness matrices derived from ancestral recombination graphs, improving detection of QTLs in populations with limited imputation resources.

The paper finds that CODIS STR markers are located in regions with higher densities of trait-associated variants compared to other STRs.

ATLAS, a C++ toolkit that models post-mortem damage when genotyping ancient or low-depth BAM data, avoided GATK's reference bias and made fewer errors at higher depth in simulations.

This paper introduces a method to infer heterozygosity from low coverage genomes, showing it can accurately estimate diversity in ancient samples.

This study shows early European farmers descended directly from Neolithic Aegeans, linking Mediterranean and Central European farmers to southwestern Asia.