Martin Eisenacher

The paper introduces mzQC, a standard for representing quality control metrics in mass spectrometry, enabling interoperable and machine-readable QC reporting.

ProteoBench provides a centralized platform for comparing proteomics data analysis workflows, enabling benchmarking and community collaboration.

The paper investigates microglial dynamics and modulation in MS models using siponimod, showing reduced neuronal damage and changes in microglial markers.

This study analyzes bipartite peptide-protein graphs in proteomics, showing how graph structures vary with data type and organism, and highlights the challenge of quantifying proteins without unique peptides.

The paper introduces GoMi, a manually curated gold standard corpus for miRNA Named Entity Recognition, to train and test machine learning and rule-based approaches.

The paper introduces a standardized metadata format for proteomics datasets to improve reusability and integration across public repositories.

The paper introduces PEFF, a new format for proteomics data that enhances FASTA with metadata for sequence variants and PTMs, enabling better analysis in proteogenomics and top-down proteomics.

The paper introduces PIA, a tool for protein inference in proteomics, highlights its support for PSI standards, and benchmarks it against a dataset for isoform detection.