Author

Aakash Sur

University of WashingtonORCID 0000-0003-2946-0038Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Organism:yeast· 2 Approach:benchmark study· 1 Approach:experimental assay· 1 Assay:Hi-C· 1 Organism:plant (other)· 1 Approach:statistical model· 1

Frequent Co-Authors

Peter John MyleriD· 3 shared William Stafford NobleiD· 2 shared Bryan C. JenseniD· 1 shared Isabelle Q. PhaniD· 1 shared Jacquelyn R. McDonaldiD· 1 shared Jeffrey A. RanishiD· 1 shared Marilyn ParsonsiD· 1 shared Mark A. K. GillespieiD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 24 mutual co-author links

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3 shared papersGenomics

Peter John MylerORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintApr 20, 2022

A benchmark of Hi-C scaffolders using reference genomes and de novo assemblies

Aakash Sur, William Stafford Noble, Peter John Myler

The paper benchmarks five Hi-C scaffolders on four reference genomes, finding HiRise and Lachesis perform best across various conditions.

5 citations

𝕏 PostBluesky

GenomicsbioRxivPreprintMar 25, 2022

Edison: measuring scaffolding accuracy with edit distance

Aakash Sur, William Stafford Noble, Shawn T Sullivan, Peter John Myler

Edison evaluates scaffolding accuracy using edit distance, showing it is more reliable than N50 for assessing genome assembly quality.

1 citation

yeastwhole-genome sequencing

𝕏 PostBluesky

Molecular BiologymSpherePeer-reviewedFeb 24, 2021

Chromatin-associated protein complexes link DNA base J and transcription termination in Leishmania

Bryan C. Jensen, Isabelle Q. Phan, Jacquelyn R. McDonald…·Peter John Myler

The paper identifies JBP3, a J-binding protein in Leishmania, which associates with complexes involved in transcription termination and chromatin remodeling, enabling polycistronic transcription and post-transcriptional regulation.

26 citations

humanexperimental assay

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