Author

Ximei Luo

Johns Hopkins UniversityORCID 0000-0003-2956-6799Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 2 Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:mouse· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

Jiang X. QianiD· 3 shared Feng‐Quan ZhouiD· 2 shared Anish R. KosanamiD· 1 shared Arinze OchubaiD· 1 shared Bryan C. Dong· 1 shared Cedric D. MooreiD· 1 shared Chang‐Mei LiuiD· 1 shared Cheng QiiD· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersNeuroscience

Jiang X. QianORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 26, 2025

Chimera: Ultrafast and Memory-efficient Database Construction for High-Accuracy Taxonomic Classification in the Age of Expanding Genomic Data

Qinzhong Tian, Pinglu Zhang, Yanming Wei…·Ximei Luo

Chimera constructs a high-accuracy, memory-efficient database for metagenomic classification, outperforming Kraken2 in speed and scalability.

1 citation

metagenomicsstatistical model

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NeuroscienceJournal of Clinical InvestigationPeer-reviewedNov 28, 2023

Histone methyltransferase Ezh2 coordinates mammalian axon regeneration via epigenetic regulation of key regenerative pathways

Xuewei Wang, Shuguang Yang, Ming‐Wen Hu…·Feng‐Quan Zhou

This study shows Ezh2 promotes axon regeneration in the PNS and CNS by epigenetically regulating genes involved in regeneration and inhibitory signaling.

31 citations

mousebulk RNA-seq

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NeurosciencebioRxivPreprintJul 20, 2023

Targeting pioneer transcription factor Ascl1 to promote optic nerve regeneration

Bryan C. Dong, Ximei Luo, Cheng Qi…·Feng‐Quan Zhou

This study shows that overexpressing Ascl1 promotes optic nerve regeneration and retinal ganglion cell survival in mice by activating Sox11.

2 citations

mousebulk RNA-seq

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Systems BiologyNature CommunicationsPeer-reviewedFeb 4, 2021

An All-to-All Approach to the Identification of Sequence-Specific Readers for Epigenetic DNA Modifications on Cytosine

Guang Song, Guohua Wang, Ximei Luo…·Heng Zhu

The paper withdraws its manuscript due to the need for further experimental validation of its conclusions.

35 citations

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