Author

Björn Schwalb

Max Planck Institute for Biophysical ChemistryORCID 0000-0003-2987-2622Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Assay:long-read sequencing· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Patrick CrameriD· 2 shared Gabriel VillamiliD· 1 shared Julien GagneuriD· 1 shared Kerstin C. Maier· 1 shared Leonhard WachutkaiD· 1 shared Saskia GresseliD· 1 shared

Activity by Year

2019-2019 · peak 2/yr

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6 top collaborators · 9 mutual co-author links

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2 shared papersMolecular Biology

Patrick CramerORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintJun 4, 2019

Transient transcriptome sequencing: computational pipeline to quantify genome-wide RNA kinetic parameters and transcriptional enhancer activity

Gabriel Villamil, Leonhard Wachutka, Patrick Cramer…·Björn Schwalb

This paper presents a computational pipeline for analyzing TT-seq data to quantify RNA kinetic parameters and enhancer activity.

6 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

Molecular BiologybioRxivMay 11, 2019

Native molecule sequencing by nano-ID reveals synthesis and stability of RNA isoforms

Kerstin C. Maier, Saskia Gressel, Patrick Cramer, Björn Schwalb

The paper introduces nano-ID, a method using nanopore sequencing and machine learning to study RNA isoform synthesis and stability, revealing differences in metabolism between individual isoforms and gene-level estimates.

64 citations

humanlong-read sequencing

𝕏 PostBluesky