Miles Richardson

MCSPACE infers microbiome spatiotemporal dynamics from co-localization data, showing superior performance over existing methods in mice and human datasets.

SAMPL-seq identifies spatial hubs in the human gut microbiome by sampling micron-scale sub-communities and analyzing microbial co-occurrence across individuals and time.

The paper introduces DRAFTS, a method for multiplexed transcriptional measurement in cell-free systems, and shows functional differences in gene expression across bacterial species and hybrid lysates.