Author

Jan Bařinka

Max Delbrück CenterORCID 0000-0003-3252-7029Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Andreas TrumppiD· 2 shared Lars VelteniD· 2 shared Simon F. HaasiD· 2 shared Simon RaffeliD· 2 shared Adriane HalikiD· 1 shared Aina BernaliD· 1 shared Aino‐Maija LeppäiD· 1 shared Alexander WaclawiczekiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersGenomics

Andreas TrumppORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintAug 29, 2026

Perturb-seq identifies co-regulated gene programs shaping hematopoietic stem and progenitor cell function

Joseph S. Bowness, Aina Bernal, Jan Bařinka…·Lars Velten

This study uses Perturb-seq to identify gene regulatory programs in HSPCs that link genetic regulators to cell biological processes and stem cell phenotypes.

DOI 10.64898/2026.08.27.747033

mousebulk RNA-seq

𝕏 PostBluesky

Cancer BiologybioRxivPreprintAug 26, 2026

Multiscale biological interactions define clinical trajectories in acute myeloid leukemia

Jan Bařinka, Sarah Gräßle, Magdalena Pajonk…·Simon Haas

This study links multiscale biological interactions to clinical outcomes in AML by analyzing single-cell data and developing an analytical framework.

DOI 10.64898/2026.08.25.746926

humanscRNA-seq

𝕏 PostBluesky