Author

Matan Arbel

Tel Aviv UniversityORCID 0000-0003-3415-9098Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Approach:machine learning (classical)· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Organism:yeast· 2 Organism:bacteria (other)· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Batia Liefshitz· 2 shared Martin KupieciD· 2 shared Tamir TulleriD· 2 shared Alex M. BronsteiniD· 1 shared Daniel Benarroch· 1 shared Doron Naki· 1 shared Efi Moree· 1 shared Itamar Menuhin-GrumaniD· 1 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersGenetics

Batia Liefshitz

Mutual co-authors in cluster

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4 papers

Recent·Most cited

Synthetic BiologyScience AdvancesPeer-reviewedOct 1, 2025

AI-directed gene fusing prolongs the evolutionary half-life of synthetic gene circuits

Itamar Menuhin-Gruman, Matan Arbel, Doron Naki…·Tamir Tuller

The paper introduces a gene fusion strategy using machine learning to improve the evolutionary stability of synthetic gene circuits in yeast.

4 citations

yeastmachine learning (classical)

𝕏 PostBluesky

Synthetic BiologybioRxivPreprintJan 15, 2025

Computational design of toehold switches in eukaryotes and prokaryotes for efficient post-transcriptional control

Yehuda Landau, Matan Arbel, Daniel Benarroch…·Tamir Tuller

The paper develops Triggate, a computational tool for designing toehold switches with improved on/off ratios in both prokaryotes and eukaryotes.

DOI 10.1101/2025.01.15.633215

bacteria (other)human

𝕏 PostBluesky

GeneticsbioRxivPreprintFeb 18, 2024

PCNA unloading is crucial for the bypass of DNA lesions by homologous recombination

Matan Arbel, Batia Liefshitz, Nir Katz…·Martin Kupiec

This study shows that PCNA unloading is necessary for homologous recombination to occur, even without the Srs2 helicase.

1 citation

experimental assay

𝕏 PostBluesky

GeneticsmBioPeer-reviewedMay 4, 2020

Access to PCNA by Srs2 and Elg1 controls the choice between alternative repair pathways in yeast

Matan Arbel, Alex M. Bronstein, Soumitra Sau…·Martin Kupiec

The paper shows that SUMOylation of PCNA represses a recombination-based repair pathway in yeast, which can be counteracted by Elg1 or Rad52.

21 citations

yeaststatistical model

𝕏 PostBluesky