Alison Simmons

The paper presents the Human Gut Cell Atlas v1.0, a unified reference of gut cell diversity, revealing how tissue structure influences cellular composition and enabling disease and organoid analysis.

The paper defines the developmental circuits and mechanisms underlying postnatal intestinal epithelial immune competency using single-cell multi-omics and spatial transcriptomics.

This paper introduces TRAP, a deep learning platform for predicting CD8+ T-cell epitopes, which outperforms existing methods in cancer and pathogenic settings.

This paper describes a method using DSP fixation to preserve single cells for RNA sequencing, showing it maintains RNA complexity and reduces technical variability.