Author

Jianjun Shen

The University of Texas MD Anderson Cancer CenterORCID 0000-0003-3626-9936Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Luis Della Coletta· 2 shared Yue LuiD· 2 shared Bigang Liu· 1 shared Bin LiuiD· 1 shared CD Mikulec· 1 shared D Zhang· 1 shared Dean G. TangiD· 1 shared Jiameng DaniD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersMolecular Biology

Luis Della Coletta

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2 papers

Recent·Most cited

Molecular BiologyScience AdvancesPeer-reviewedAug 23, 2024

The ICF syndrome protein CDCA7 harbors a unique DNA-binding domain that recognizes a CpG dyad in the context of a non-B DNA

Swanand Hardikar, Ren Ren, Zhengzhou Ying…·Taiping Chen

The paper identifies a unique DNA-binding domain in CDCA7 that recognizes a CpG dyad in non-B DNA, linking it to DNA methylation specificity in ICF syndrome.

22 citations

humanDNA methylation

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BioinformaticsJournal of Biomolecular Techniques JBTPeer-reviewedNov 14, 2022

Commercial ChIP-Seq library preparation kits performed differently for different classes of protein targets

MS Simper, Luis Della Coletta, Sally Gaddis…·Yue Lu

This study compares four ChIP-Seq library preparation protocols for three different protein targets, finding that each protocol performs best for specific enrichment patterns and input DNA levels.

2 citations

ChIP-seqexperimental assay

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