Author

Annita Louloupi

Max Planck Institute for Molecular GeneticsORCID 0000-0003-3729-9002Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Organism:human· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Ulf Andersson ØromiD· 3 shared Evgenia NtiniiD· 2 shared Julia Liz· 1 shared Julianus PfeufferiD· 1 shared Rosario Michael PiroiD· 1 shared Thomas ConradiD· 1 shared V. CostaiD· 1 shared

Activity by Year

2017-2020 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 11 mutual co-author links

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3 shared papersMolecular Biology

Ulf Andersson ØromORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 12, 2020

SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency

V. Costa, Julianus Pfeuffer, Annita Louloupi…·Rosario Michael Piro

SPLICE-q quantifies splicing efficiency using RNA-seq data and is applied to yeast, human nascent RNA-seq, and prostate cancer samples.

DOI 10.1101/2020.10.12.318808

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Molecular BiologyCell ReportsPeer-reviewedJun 1, 2018

Transient N-6-methyladensosine Transcriptome sequencing reveals a regulatory role of m6A in splicing efficiency

Annita Louloupi, Evgenia Ntini, Thomas Conrad, Ulf Andersson Ørom

The paper investigates the role of m6A in splicing efficiency by analyzing nascent RNA transcripts and shows that early m6A deposition accelerates splicing.

239 citationstop 1%

bulk RNA-seqstatistical model

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Molecular BiologyRNAPeer-reviewedMar 1, 2017

Microprocessor dynamics shows co- and post-transcriptional processingof pri-miRNAs

Annita Louloupi, Evgenia Ntini, Julia Liz, Ulf Andersson Ørom

The paper develops a method to study pri-miRNA processing kinetics in vivo and shows co- and post-transcriptional processing occurs with varying speeds.

19 citations

experimental assay

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