Author

Swneke Donovan Bailey

Research Institute of the McGill University Health CentreORCID 0000-0003-3778-8391Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Cancer Biology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 4 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:ChIP-seq· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Yifei YaniD· 2 shared Ansley GnanapragasamiD· 1 shared Betty GianniasiD· 1 shared Courtney DawesiD· 1 shared Emily R. WilsoniD· 1 shared France BourdeauiD· 1 shared Greta Everisto· 1 shared Hailey E. JohnsoniD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersCancer Biology

Yifei YanORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Cancer BiologybioRxivPreprintJul 9, 2025

Optimized large-scale longitudinal biorepository of gastroesophageal adenocarcinoma patient-derived organoids: High-fidelity models for personalized treatment to overcome resistance.

Mingyang Kong, Sanjima Pal, Shuyuan Wang…·Lorenzo Edwin Ferri

The paper establishes a large-scale biobank of GEA patient-derived organoids that accurately model tumor features and drug responses, enabling personalized treatment strategies.

DOI 10.1101/2025.07.09.663874

humanorganoid / primary culture

𝕏 PostBluesky

Cancer BiologyNature CommunicationsPeer-reviewedJul 20, 2024

3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression

Katelyn L. Mortenson, Courtney Dawes, Emily R. Wilson…·Xiaoyang Zhang

The paper introduces HAPI, a 3D genomics method, to identify enhancer hijacking in cancer cell lines, revealing novel oncogene activation mechanisms.

37 citationstop 4%

humanHi-C

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 12, 2020

HisTrader: A Tool to Identify Nucleosome Free Regions from ChIP-Seq of Histone Post-Translational Modifications

Yifei Yan, Ansley Gnanapragasam, Swneke Donovan Bailey

HisTrader identifies nucleosome free regions (NFRs) within histone modification ChIP-seq peaks to improve motif analysis accuracy.

DOI 10.1101/2020.03.12.989228

humanChIP-seq

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedAug 22, 2018

C3D: A tool to predict 3D genomic interactions between cis-regulatory elements

Tahmid Mehdi, Swneke Donovan Bailey, Paul Guilhamon, Mathieu Lupien

C3D predicts 3D genomic interactions between cis-regulatory elements using DNA accessibility correlations, achieving 32.7% accuracy in K562 cells.

15 citations

humanChIP-seq

𝕏 PostBluesky