Author

Yuki Matsubara

National Cancer Center Exploratory Oncology Research & Clinical Trial CenterORCID 0000-0003-4009-0015Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Cancer Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Ayako SuzukiiD· 1 shared Eiji OkiiD· 1 shared Hideaki BandoiD· 1 shared Hiromichi EbiiD· 1 shared Katsuya TsuchiharaiD· 1 shared Kyoko KuriharaiD· 1 shared Masaki Ohira· 1 shared Motohiro KojimaiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperCancer Biology

Ayako SuzukiORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

Cancer BiologybioRxivPreprintOct 22, 2026

SPATNIC enables H&E-grounded cancer-cell identification across spatial and single-cell transcriptomic modalities in colorectal cancer

Shunsuke A. Sakai, Ryosuke Nomura, Masaki Ohira…·Riu Yamashita

SPATNIC is a variational autoencoder that identifies cancer cells from spatial and single-cell transcriptomic data in colorectal cancer, outperforming existing tools and identifying a rare cancer stem cell population.

DOI 10.64898/2026.10.21.760612

humanspatial transcriptomics

𝕏 PostBluesky