Author

Riu Yamashita

Tokyo University of ScienceORCID 0000-0002-6000-0155Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Riu Yamashita1 paper · National Cancer Center Hospital East

Biology Disciplines

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Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Ayako SuzukiiD· 1 shared Eiji OkiiD· 1 shared Hideaki BandoiD· 1 shared Hiromichi EbiiD· 1 shared Katsuya TsuchiharaiD· 1 shared Kyoko KuriharaiD· 1 shared Masaki Ohira· 1 shared Motohiro KojimaiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperCancer Biology

Ayako SuzukiORCID

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1 paper

Recent·Most cited

SPATNIC enables H&E-grounded cancer-cell identification across spatial and single-cell transcriptomic modalities in colorectal cancer

Shunsuke A. Sakai, Ryosuke Nomura, Masaki Ohira, Kyoko Kurihara, SungGi Chi, Yuki Matsubara, Yukiko Morinaga, Takeshi Kato, Naoko Takeda-Miyata, Motohiro Kojima, Shingo Sakashita, Hiromichi Ebi, Rui Yamaguchi, Eiji Oki, Takao Fujisawa, , Riu Yamashita

SPATNIC is a variational autoencoder that identifies cancer cells from spatial and single-cell transcriptomic data in colorectal cancer, outperforming existing tools and identifying a rare cancer stem cell population.

bioRxiv · Oct 22, 2026 · PreprintCancer Biology