Author

Kalins Banerjee

University of MichiganORCID 0000-0003-4314-5114Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:differential expression· 2 Assay:spatial transcriptomics· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:genetic perturbation / CRISPR· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Evan T. KelleriD· 2 shared Adam W. OlsoniD· 1 shared Andrew J. PutnamiD· 1 shared Arul M. ChinnaiyaniD· 1 shared Atticus J. McCoyiD· 1 shared Dorraya El‐AshryiD· 1 shared Jonathan LiiD· 1 shared Lana KingiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Evan T. KellerORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintJul 4, 2026

SPICE: A Robust Computational Framework for Identifying Copy Number Variations in Spatial Transcriptomics

Kalins Banerjee, Robert C. Langefeld, Evan T. Keller, Xiang Zhou

SPICE identifies somatic CNVs and ASCN profiles from spatial transcriptomics data by integrating gene expression, spatial coordinates, and SNPs to improve CNV detection accuracy.

DOI 10.64898/2026.06.30.735508

spatial transcriptomicsstatistical model

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Cancer BiologyProceedings of the National Academy of SciencesPeer-reviewedApr 10, 2026

Amoeboid-Mesenchymal Transition and the Proteolytic Control of Cancer Invasion Plasticity

Adam W. Olson, Jonathan Li, Xiao-Yan Li…·Stephen J. Weiss

This study identifies MMP14 as essential for cancer cell invasion through ECM barriers, showing that its proteolytic activity is required for maintaining nuclear integrity and facilitating invasion in both synthetic and human tissue models.

4 citationstop 2%

humanscRNA-seq

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