Author

Mark P. Zwart

Netherlands Institute of EcologyORCID 0000-0003-4361-7636Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Ecology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1

Frequent Co-Authors

Anne KupczokiD· 1 shared Cassidy DietziD· 1 shared Dick de RidderiD· 1 shared Dieke BoezeniD· 1 shared Dimitris KarapliafisiD· 1 shared Floris van Noort· 1 shared Ghulam AliiD· 1 shared Ingrida OlendraitėiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperBioinformatics

Anne KupczokORCID

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3 papers

Recent·Most cited

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedJun 27, 2026

RdRpCATCH: A unified resource for RNA virus discovery using viral RNA-dependent RNA polymerase profile Hidden Markov models

Dimitris Karapliafis, Uri Neri, Ingrida Olendraitė…·Anne Kupczok

RdRpCATCH consolidates multiple RdRp pHMM databases into a single platform for RNA virus discovery and taxonomic annotation, improving accessibility and performance.

2 citations

metagenomicsstatistical model

𝕏 PostBluesky

EcologySoil Biology and BiochemistryPeer-reviewedMar 12, 2025

Nematodes Vector Bacteriophages in Compost and Soil

Lisa van Sluijs, Cassidy Dietz, Floris van Noort…·Kyle Mason‐Jones

This study shows nematodes transport bacteriophages in soil and compost through both cuticular attachment and ingestion, without requiring host bacteria.

10 citations

C. elegansexperimental assay

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GeneticsPLoS GeneticsPeer-reviewedJun 6, 2022

Empirical estimates of the mutation rate for an alphabaculovirus

Dieke Boezen, Ghulam Ali, Manli Wang…·Mark P. Zwart

The paper estimates the mutation rate of an alphabaculovirus using a stable genomic insert to avoid selection bias, finding a low mutation rate of 1x10-7 s/n/r.

11 citations

statistical modelbenchmarking

𝕏 PostBluesky